Oklahoma Bioinformatics Society Symposium
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Plenary Speakers
Dr. Michael Centola
Michael Centola President of Riley Genomics (RiGen) Inc.
  • Assistant Member, Arthritis and Immunology Research Program
  • Director, OMRF Microarray Research Facilit
  • Adjunct Associate Professor, University of Oklahoma Health Sciences Center, Department of Microbiology and Immunology
  • Mentoring Faculty Member, Oklahoma Center for Neuroscience
Education B.Sc., Biological Science, University of Southern California, 1987
M.A., Biological Science, University of California, Santa Barbara, 1989
Ph.D., Molecular Biology and Biochemistry, University of California, Santa Barbara 1993
Research Interests

Using genomics- and proteomics-based biomedical discovery technology and bioinformatics, our lab helps to define the molecular mechanisms mediating human inflammatory diseases including rheumatoid arthritis, juvenile rheumatoid arthritis, spondyloarthropathies, and inflammatory bowel disease.

Patients samples are collected in ongoing clinical research programs in collaboration with local physicians and clinical researchers. Gene and protein-based biomarkers of disease activity are then identified in broad-based screening assays and the massive data sets integrated with clinical data. Our studies have led to a refined understanding of the etiopathology of these complex disorders by defining novel disease mediators and the mechanisms in which they participate.

A principal focus of our laboratory is to utilize this discovery pipeline to create the next generation of diagnostic and therapeutic response tests that will enhance treatment through broad-based monitoring of disease regulators. A section of the lab develops novel bioinformatics methodologies necessary to present these complex data in a manner that can be used practically by clinicians.

 
Anton Yuryev Ph.D
Michael Centola Anton Yuryev received his Ph.D at Johns Hopkins University where he discovered the proteins physically linking transcription and splicing processes in eukaryotic cells. His postdoc was at Novartis Pharmaceuticals where he showed that mammalian protein kinase could be imported into mitochondria. During the birth of Bioinformatics he started working as Senior Scientist at InforMax and then continued at Orchid Bioscience as Senior Bioinformatics Analyst. Anton Yuryev has published over 20 scientific publications and is an author of several algorithms for primer design and pathway analysis. He is now the Executive Director of Application Science at Ariadne Genomics.
 
Richard D. Cummings, Ph.D.
Michael Centola Ed Miller Endowed Chair in Molecular Biology
George Lynn Cross Professor in Biochemistry
Professor, Biochemistry & Molecular Biology
Ph.D., Johns Hopkins, 1980
http://w3.ouhsc.edu/biochem/cummingslab.htm

Research interests: Glycoconjugate structure/function/biosynthesis; cell adhesion involving lectins and glycoproteins in human inflammation, tumor metastasis and schistosomiasis.

My laboratory is interested in the fundamental biological process by which cells adhere to each other and interact with the extracellular matrix or basement membrane. This research area also relates to processes by which animal pathogens, such as viruses, bacteria, and parasites stick to animal cells and initiate disease. Cell adhesion is an essential prelude to animal cell development, differentiation, tumor metastasis, inflammation and microbial pathogenesis.

Many recent studies indicate that carbohydrate residues within glycoconjugates on the surfaces of cells and in the extracellular matrices are critically involved in cell "stickiness" or cell adhesion phenomena. The overall hypothesis is that these glycoconjugates are recognized and bound by a class of proteins called lectins expressed by a wide variety of cells. There are likely to be many different lectins and many different glycoconjugates involved in cell adhesion. My laboratory is currently studying lectins and glycoconjugates important in a wide variety of cell adhesion phenomena. These include leukocyte recruitment to sites of inflammation in human tissues, adhesion of human rotaviruses to human intestinal cells, structure and immunogenicity of glycoproteins on the surfaces of the human parasitic blood fluke Schistosoma mansoni, binding of lectins to glycoproteins of the extracellular matrix, and the cloning and identification of genes encoding lectins and enzymes (glycosyl transferases) responsible for synthesizing glycoconjugates.

 
Harold R. (Skip) Garner, Ph.D.
Skip P. O'B, Montgomery Distinguished Chair in Developmental Biology
Professor of Biochemistry and Internal Medicine
McDermott Center for Human Growth and Development
Center for Biomedical Inventions
University of Texas Southwestern Medical Center at Dallas
Computational Biology Lab (NA2.508A)
(214) 648-1661 fax: (214) 648-1445
Educational Background:
  • University of Missouri, Rolla, MO; B.S. 1976 Nuclear Engineering
  • University of Wisconsin, Madison, WI; M.S. 1978 Nuclear Engineering
  • University of Wisconsin, Madison, WI; Ph.D. 1982 Plasma Physics
  • University of Missouri, Rolla, MO; P.E. (Honorary) 1994 Nuclear Engineering
Professional Positions:
  • 2000 - 2002 - Program Chair, Joint Biomedical Engineering Graduate Program, UT Southwestern Medical Center at Dallas and University of Texas at Arlington
  • 1997 - Present - P.O'B Montgomery Distinguished Professor of Biochemistry and Internal Medicine
  • 1994 - 1998 - Professor of Biochemistry and Associate Director, Genome Science and Technology Center, UT Southwestern Medical Center at Dallas
  • 1991 - 1994 - Principal Scientist, General Atomics, San Diego, CA
  • 1986 - 1993 - Appointed to the Institute for Development and Application of Advanced Technology at General Atomics
  • 1982 - 1986 - Senior Scientist, General Atomics, San Diego, CA
Our laboratory (http://innovation.swmed.edu) develops applied computational biology/bioinformatics applications, instrumentation and methods, especially focused to address important topics in genetics, genomics, biology and medicine. We have built devices and software solutions to facilitate rapid progress in biomedicine, and these have lead to a number of computational tools and databases that are available via the world wide web, a variety of instruments, some of which have been commercialized, some spin-off companies and a series discoveries in biology and medicine. The Innovation Laboratory staff is multi-disciplinary, including physicists, engineers, mathematicians, biologists and physicians. The Innovation Research and Development Laboratory personnel are engaged in a number of collaborations throughout the world, with academic and corporate institutions, supplying technology and conducting research in cancer, heart disease, drug discovery, biodefense, computer science and engineering.